Publications

This page is generated from the public ORCID record, with publication metadata supplemented from OpenAlex and Crossref. For citation counts and a broader publication profile, see Google Scholar.

Preprints2025–20268

Making Course Structure Visible in a Multi-Instructor Graduate Genomics Course: A Course-Level Evaluation of Standardized Learning Supports

Marie Saitou; Celian Diblasi

Imputed graph-genotyped structural variants identify regulatory haplotypes associated with gene expression in Atlantic salmon

Maëlys Chapis; Domniki Manousi; Célian Diblasi; Cathrine Brekke; Junsoung Kwak; Arturo Vera Ponce de León; Mariann Árnyasi; Randi Fenstad; Solomon Boison; Marie Saitou

bioRxiv

Ancient persistence and recurrent emergence of structural variants across divergent Atlantic salmon lineages

Célian Diblasi; Jun Soung Kwak; Domniki Manousi; Mariann Árnyasi; Arturo Vera-Ponce de Leon; Nicola J. Barson; Marie Saitou

bioRxiv

No-take zone effectiveness in linear coastal systems depends on spatially heterogeneous placement and larval dispersal directionality

Marie Saitou; Louise Chavarie; Thrond O. Haugen

bioRxiv

Metatranscriptomic Insights into Microbial Dynamics Prior to Disease Onset in Atlantic Salmon Aquaculture

Marie Saitou; Arturo Vera-Ponce de León; Akira Harding; Célian Diblasi; Domniki Manousi; Jun Soung Kwak; David G. Hazlerigg T; Turid Mørkøre; Lars-Gustav Snipen

bioRxiv

Large-scale eQTL analyses in Atlantic salmon reveal persistent dosage compensation 100 million years after genome duplication

Célian Diblasi; Domniki Manousi; David G. Hazlerigg; Lars Grønvold; Nicola J. Barson; Simen R. Sandve; Marie Saitou

bioRxiv

Impaired trap closure in the counting-deficient Venus flytrap mutant DYSCALCULIA is caused by cell wall biomechanics

Sonja Trebing; Matthias Freund; Anda Iosip; Célian Diblasi; Vincent Krennerich; Jonathan Kirshner; Mitsuhiko P. Sato; André Marques; Marie Saitou; Dirk Becker; Victor A. Albert; Ingrid Teßmer; Kenji Fukushima; Rainer Hedrich; Ines Kreuzer

bioRxiv

A major locus on chromosome 14 impacts developmental variation of Atlantic salmon smoltification

Marie Saitou; Domniki Manousi; Jayme van Dalum; Anja Striberny; Lars Grønvold; Cathrine Brekke; Solomon Antwi Boison; Jun Soung Kwak; Arturo Vera Ponce de León; Bjarne Gjerde; Even H. Jørgensen; David G. Hazlerigg; Simen R. Sandve

bioRxiv

Peer-reviewed publications2021–202616

Resampling-based evaluation of a 79-SNP panel for hybrid classification across generations: a case study in European lobster ( Homarus gammarus )

Erik Sandertun Røed; Charlie Ellis; Jamie R. Stevens; Louise Chavarie; Marie Saitou

G3: Genes, Genomes, Genetics

Gene gain and loss drive the diversification of gig immune genes in teleosts: structural and regulatory insights from Atlantic salmon

Domniki Manousi; Shahmir Naseer; Samuel Martín; Simen R. Sandve; Marie Saitou

Fish & Shellfish Immunology

Comparative Transcriptomics Suggests that Breast Secretory Epithelium Reuses Gene Repertoires Conserved Across Vertebrates Beyond Mammals

Marie Saitou

Genome Biology and Evolution

Switch-like gene expression modulates disease risk

Alber Aqil; Yanyan Li; Zhiliang Wang; Safiqul Islam; M. A. H. Russell; Theodora Kunovac Kallak; Marie Saitou; Ömer Gökçümen; Naoki Masuda

Nature Communications

Parallel Selection in Domesticated Atlantic Salmon from Divergent Founders Including on Whole-Genome Duplication-derived Homeologous Regions

Pauline Buso; Célian Diblasi; Domniki Manousi; Jun Soung Kwak; Arturo Vera-Ponce de León; Kristina Stenløkk; Nicola J. Barson; Marie Saitou

Genome Biology and Evolution

Dissecting the genetic basis of response to salmonid alphavirus in Atlantic salmon

Domniki Manousi; Dorota Monika Jaskula; Fabian Grammes; Tim Martin Knutsen; Shahmir Naseer; Samuel Martín; Thomas Moen; Marie Saitou; Sigbjørn Lien

BMC Genomics

Beyond inversions and deletions: the evolutionary and functional insights from translocations, fissions, and fusions in animal genomes

Célian Diblasi; Marie Saitou

Heredity

Insights into epigenetic regulation of cyp19a via comparative analysis using the scombrid chub mackerel as model

Mariel Galotta; Anh Tuan Dam; Yuhei Eto; Atsushi Toyoda; Takehiko Itoh; Sipra Mohapatra; Yukiko Ogino; Marie Saitou; Michiya Matsuyama; Tapas Chakraborty; Kohei Ohta

Frontiers in Marine Science

Functional and regulatory diversification of Period genes responsible for circadian rhythm in vertebrates

Jun Soung Kwak; M. Ángel León‐Tapia; Célian Diblasi; Domniki Manousi; Lars Grønvold; Guro K. Sandvik; Marie Saitou

G3: Genes, Genomes, Genetics

Allele frequency impacts the cross-ancestry portability of gene expression prediction in lymphoblastoid cell lines

Marie Saitou; Andy Dahl; Qingbo Wang; Xuanyao Liu

American journal of human genetics

Human subsistence and signatures of selection on chemosensory genes.

Carrie C. Veilleux; Eva C. Garrett; Petar Pajic; Marie Saitou; Joseph Ochieng; Lilia D. Dagsaan; Nathaniel J. Dominy; George H. Perry; Ömer Gökçümen; Amanda Melin

Communications Biology

Gene communities in co-expression networks across different tissues.

M. A. H. Russell; Alber Aqil; Marie Saitou; Omer Gokcumen; Naoki Masuda

PLOS Computational Biology

The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms

Kimberly Walker; Divya Kalra; Rebecca F. Lowdon; Guangyi Chen; David Molik; Daniela C. Soto; Fawaz Dabbaghie; Ahmad Al Khleifat; Medhat Mahmoud; Luis F. Paulin; Muhammad Sohail Raza; Susanne P. Pfeifer; Daniel Paiva Agustinho; Elbay Aliyev; Pavel Avdeyev; Enrico R. Barrozo; Sairam Behera; Kimberley J. Billingsley; Li Chuin Chong; Deepak Choubey; Wouter De Coster; Yilei Fu; Alejandro R. Gener; Timothy Hefferon; David Henke; Wolfram Höps; Anastasia Illarionova; Michael D. Jochum; María José; Rupesh K. Kesharwani; Sree Rohit Raj Kolora; Jędrzej Kubica; Priya Lakra; Damaris Lattimer; Chia-Sin Liew; Bai-Wei Lo; Chun-Hsuan Lo; Anneri Lötter; Sina Majidian; Suresh Kumar Mendem; Rajarshi Mondal; Hiroko Ohmiya; Nasrin Parvin; Carolina M. Peralta; Chi-Lam Poon; Ramanandan Prabhakaran; Marie Saitou; Aditi Sammi; Philippe Sanio; Nicolae Sapoval; Najeeb Syed; Todd J. Treangen; Gaojianyong Wang; Tiancheng Xu; Jianzhi Yang; Shangzhe Zhang; Weiyu Zhou; Fritz J. Sedlazeck; Ben Busby

F1000Research

The emergence of supergenes from inversions in Atlantic salmon

Kristina Stenløkk; Marie Saitou; Live Rud-Johansen; Torfinn Nome; Michel Moser; Mariann Árnyasi; Matthew Kent; Nicola J. Barson; Sigbjørn Lien

Philosophical Transactions of the Royal Society B: Biological Sciences

Similarity-based analysis of allele frequency distribution among multiple populations identifies adaptive genomic structural variants

Marie Saitou; Naoki Masuda; Ömer Gökçümen

Molecular Biology and Evolution

Sex-specific phenotypic effects and evolutionary history of an ancient polymorphic deletion of the human growth hormone receptor.

Marie Saitou; Skyler Resendez; Apoorva J. Pradhan; Fuguo Wu; Natasha Lie; Nancy J. Hall; Qihui Zhu; Laura G. Reinholdt; Yoko Satta; Leo Speidel; Shigeki Nakagome; Neil A. Hanchard; Gary A. Churchill; Charles Lee; G. Ekin Atilla‐Gokcumen; Xiuqian Mu; Ömer Gökçümen

Science Advances

Earlier publications2015–20208

Functional Specialization of Human Salivary Glands and Origins of Proteins Intrinsic to Human Saliva.

Marie Saitou; Eliza A. Gaylord; Erica Xu; Alison J. May; Lubov Neznanova; Sara Nathan; Anissa Grawe; Jolie L. Chang; William R. Ryan; Stefan Rühl; Sarah M. Knox; Ömer Gökçümen

Cell Reports

The Role of p38 MAPK in Triacylglycerol Accumulation During Apoptosis

Nasi Li; Marie Saitou; G. Ekin Atilla‐Gokcumen

PROTEOMICS

Resolving the Insertion Sites of Polymorphic Duplications Reveals a HERC2 Haplotype under Selection

Marie Saitou; Ömer Gökçümen

Genome Biology and Evolution

An Evolutionary Perspective on the Impact of Genomic Copy Number Variation on Human Health

Marie Saitou; Ömer Gökçümen

Journal of Molecular Evolution

Complex Haplotypes ofGSTM1Gene Deletions Harbor Signatures of a Selective Sweep in East Asian Populations

Marie Saitou; Yoko Satta; Ömer Gökçümen

G3: Genes, Genomes, Genetics

Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees

Marie Saitou; Yoko Satta; Ömer Gökçümen; Takafumi Ishida

BMC Genomics

An evolutionary transcriptomics approach links CD36 to membrane remodeling in replicative senescence

Marie Saitou; Darleny Y. Lizardo; Recep Özgür Taşkent; Alec Millner; Ömer Gökçümen; G. Ekin Atilla‐Gokcumen

Molecular Omics

Distributions of the GSTM1 and GSTT1 Null Genotypes Worldwide are Characterized by Latitudinal Clines

Marie Saitou; Takafumi Ishida

Asian Pacific Journal of Cancer Prevention